Computational Nature of Processes Induced by Biochemical Reactions

نویسندگان

  • Andrzej Ehrenfeucht
  • Grzegorz Rozenberg
چکیده

Natural computing is concerned with human-designed computing inspired by nature as well as with computations taking place in nature, i.e., it investigates phenomena taking place in nature in terms of information processing. Well-known examples of the first strand of research are evolutionary computing, neural computation, cellular automata, swarm intelligence, molecular computing, quantum computation, artificial immune systems, and membrane computing. Examples of research themes from the second strand of research are computational nature of self-assembly, computational nature of developmental processes, computational nature of bacterial communication, computational nature of brain processes, computational nature of biochemical reactions, and system biology approach to bionetworks. While progress in the first line of research often contributes to important progress in Information and Communication Technology (ITC), advances in the second line of research often remind the general scientific community that computer science is also the fundamental science of information processing, and as such a basic science for other scientific disciplines such as, e.g., biology.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Processes Based on Biochemical Interactions: Natural Computing Point of View⋆

In this paper we investigate the interactions between biochemical reactions from the natural computing point of view. Natural computing (see, e.g., [6, 7]) is concerned with human-designed computing inspired by nature and with computation taking place in nature (i.e., it investigates processes taking place in nature in terms of information processing). The former strand of research is quite wel...

متن کامل

A Tour of reaction Systems

Natural Computing is concerned with human-designed computing inspired by nature as well as with computation taking place in nature. The latter strand of research investigates in terms of information processing, processes taking place in nature, and the computational nature of biochemical reactions is a research theme belonging here. Reaction systems are a formal framework for investigating proc...

متن کامل

Bridging the gap between stochastic and deterministic regimes in the kinetic simulations of the biochemical reaction networks.

The biochemical reaction networks include elementary reactions differing by many orders of magnitude in the numbers of molecules involved. The kinetics of reactions involving small numbers of molecules can be studied by exact stochastic simulation. This approach is not practical for the simulation of metabolic processes because of the computational cost of accounting for individual molecular co...

متن کامل

Efficient Finite Difference Method for Computing Sensitivities of Biochemical Reactions

Sensitivity analysis of biochemical reactions aims at quantifying the dependence of the reaction dynamics on the reaction rates. The computation of the parameter sensitivities poses many computational challenges when taking stochastic noise into account. This paper proposes a new efficient finite difference method for computing parameter sensitivities of biochemical reactions. We employ propens...

متن کامل

Scalable Parameter Estimation for Genome-Scale Biochemical Reaction Networks

Mechanistic mathematical modeling of biochemical reaction networks using ordinary differential equation (ODE) models has improved our understanding of small- and medium-scale biological processes. While the same should in principle hold for large- and genome-scale processes, the computational methods for the analysis of ODE models which describe hundreds or thousands of biochemical species and ...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2009